MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2865329239263429
cnr4.318026361459292
efc0.6030140473855046
fber98.46269226074219
fwhmavg3.8321233333333335
fwhmx3.71381
fwhmy4.07394
fwhmz3.70862
icvscsf0.20395579297279925
icvsgm0.46223098386671696
icvswm0.3338132231604838
inumed1.0420567989349365
inurange0.307700514793396
qi10.0
qi20.0007119922849376576
rpvecsf22.943275099565604
rpvegm11.316915240841299
rpvewm18.22726473311907
sizex180
sizey256
sizez256
snrcsf2.828939730454625
snrgm11.195969711044576
snrtotal10.276021049728293
snrwm16.803153707685677
snrdcsf14.993169339979623
snrdgm29.140456658711425
snrdtotal29.924310395868314
snrdwm45.639305188913895
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.6135549598248367
summarybgmad14.354785919189453
summarybgmean53.350257873535156
summarybgmedian52.126529693603516
summarybgn2917323.0
summarybgp0531.978240966796875
summarybgp9579.09611358642577
summarybgstdv14.665569305419922
summarycsfk0.10603307071375667
summarycsfmad124.4921875
summarycsfmean341.0550537109375
summarycsfmedian328.5174560546875
summarycsfn12803.0
summarycsfp05170.5371856689453
summarycsfp95533.4950866699219
summarycsfstdv116.12287902832031
summarygmk0.39693129894943624
summarygmmad54.29922103881836
summarygmmean638.6339111328125
summarygmmedian638.5006713867188
summarygmn44499.0
summarygmp05545.2521423339844
summarygmp95733.3715209960938
summarygmstdv57.02886962890625
summarywmk0.6166758510765331
summarywmmad49.28489685058594
summarywmmean990.3905029296875
summarywmmedian1000.00927734375
summarywmn187286.0
summarywmp05871.4849090576172
summarywmp951072.1683044433594
summarywmstdv59.513031005859375
tpmoverlapcsf0.20177939534187317
tpmoverlapgm0.5279900431632996
tpmoverlapwm0.5287679433822632
wm2max0.540904830953902

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sume73b14cf4e64028f556ce87132ac77b5
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.