MRIQC: individual T1w report

Summary

Subject ID: 037_ControlPre.
Date and time: 2018-05-06, 22:20.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2865329239263429
cnr			4.318026361459292
efc			0.6030140473855046
fber			98.46269226074219
fwhm	avg		3.8321233333333335
fwhm	x		3.71381
fwhm	y		4.07394
fwhm	z		3.70862
icvs	csf		0.20395579297279925
icvs	gm		0.46223098386671696
icvs	wm		0.3338132231604838
inu	med		1.0420567989349365
inu	range		0.307700514793396
qi	1		0.0
qi	2		0.0007119922849376576
rpve	csf		22.943275099565604
rpve	gm		11.316915240841299
rpve	wm		18.22726473311907
size	x		180
size	y		256
size	z		256
snr	csf		2.828939730454625
snr	gm		11.195969711044576
snr	total		10.276021049728293
snr	wm		16.803153707685677
snrd	csf		14.993169339979623
snrd	gm		29.140456658711425
snrd	total		29.924310395868314
snrd	wm		45.639305188913895
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.6135549598248367
summary	bg	mad	14.354785919189453
summary	bg	mean	53.350257873535156
summary	bg	median	52.126529693603516
summary	bg	n	2917323.0
summary	bg	p05	31.978240966796875
summary	bg	p95	79.09611358642577
summary	bg	stdv	14.665569305419922
summary	csf	k	0.10603307071375667
summary	csf	mad	124.4921875
summary	csf	mean	341.0550537109375
summary	csf	median	328.5174560546875
summary	csf	n	12803.0
summary	csf	p05	170.5371856689453
summary	csf	p95	533.4950866699219
summary	csf	stdv	116.12287902832031
summary	gm	k	0.39693129894943624
summary	gm	mad	54.29922103881836
summary	gm	mean	638.6339111328125
summary	gm	median	638.5006713867188
summary	gm	n	44499.0
summary	gm	p05	545.2521423339844
summary	gm	p95	733.3715209960938
summary	gm	stdv	57.02886962890625
summary	wm	k	0.6166758510765331
summary	wm	mad	49.28489685058594
summary	wm	mean	990.3905029296875
summary	wm	median	1000.00927734375
summary	wm	n	187286.0
summary	wm	p05	871.4849090576172
summary	wm	p95	1072.1683044433594
summary	wm	stdv	59.513031005859375
tpm	overlap	csf	0.20177939534187317
tpm	overlap	gm	0.5279900431632996
tpm	overlap	wm	0.5287679433822632
wm2max			0.540904830953902

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	e73b14cf4e64028f556ce87132ac77b5
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.